Package: BiasCorrector 0.2.3.9001

BiasCorrector: A GUI to Correct Measurement Bias in DNA Methylation Analyses

A GUI to correct measurement bias in DNA methylation analyses. The 'BiasCorrector' package just wraps the functions implemented in the 'R' package 'rBiasCorrection' into a shiny web application in order to make them more easily accessible. Publication: Kapsner et al. (2021) <doi:10.1002/ijc.33681>.

Authors:Lorenz A. Kapsner [cre, aut, cph], Evgeny A. Moskalev [aut]

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BiasCorrector.pdf |BiasCorrector.html✨
BiasCorrector/json (API)

# Install 'BiasCorrector' in R:

install.packages('BiasCorrector', repos = c('https://kapsner.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/kapsner/biascorrector/issues

On CRAN:

bias-correction gene-methylation genetics gui pcr shiny

3.48 score 2 stars 1 scripts 327 downloads 25 exports 75 dependencies

Last updated 20 days agofrom:a11c8d1c50. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Oct 17 2024
R-4.5-win	OK	Oct 17 2024
R-4.5-linux	OK	Oct 17 2024
R-4.4-win	OK	Oct 17 2024
R-4.4-mac	OK	Oct 17 2024
R-4.3-win	OK	Oct 17 2024
R-4.3-mac	OK	Oct 17 2024

Exports:launch_app module_calibrationfile_server module_calibrationfile_ui module_correctedplots_server module_correctedplots_ui module_correctedstatistics_ui module_correctedstats_server module_experimentalfile_server module_experimentalfile_ui module_fileupload_server module_fileupload_ui module_info_server module_info_ui module_log_server module_log_ui module_modelselection_server module_modelselection_ui module_plotting_server module_plotting_ui module_results_server module_results_ui module_settings_server module_settings_ui module_statistics_server module_statistics_ui

Dependencies:base64enc bslib cachem cli codetools colorspace commonmark crayon crosstalk data.table digest DT evaluate fansi farver fastmap fontawesome fs future future.apply ggplot2 globals glue gtable highr htmltools htmlwidgets httpuv isoband jquerylib jsonlite knitr labeling later lattice lazyeval lifecycle listenv magrittr MASS Matrix memoise mgcv mime munsell nlme nls2 parallelly pillar pkgconfig polynom promises proto R6 rappdirs rBiasCorrection RColorBrewer Rcpp rlang rmarkdown sass scales shiny shinydashboard shinyjs sourcetools tibble tinytex utf8 vctrs viridisLite withr xfun xtable yaml

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Launch BiasCorrector	launch_app
module_calibrationfile_server	module_calibrationfile_server
module_calibrationfile_ui	module_calibrationfile_ui
module_correctedplots_server	module_correctedplots_server
module_correctedplots_ui	module_correctedplots_ui
module_correctedstatistics_ui	module_correctedstatistics_ui
module_correctedstats_server	module_correctedstats_server
module_experimentalfile_server	module_experimentalfile_server
module_experimentalfile_ui	module_experimentalfile_ui
module_fileupload_server	module_fileupload_server
module_fileupload_ui	module_fileupload_ui
module_info_server	module_info_server
module_info_ui	module_info_ui
module_log_server	module_log_server
module_log_ui	module_log_ui
module_modelselection_server	module_modelselection_server
module_modelselection_ui	module_modelselection_ui
module_plotting_server	module_plotting_server
module_plotting_ui	module_plotting_ui
module_results_server	module_results_server
module_results_ui	module_results_ui
module_settings_server	module_settings_server
module_settings_ui	module_settings_ui
module_statistics_server	module_statistics_server
module_statistics_ui	module_statistics_ui