Package: rBiasCorrection 0.3.4.9001

rBiasCorrection: Correct Bias in DNA Methylation Analyses

Implementation of the algorithms (with minor modifications) to correct bias in quantitative DNA methylation analyses as described by Moskalev et al. (2011) <doi:10.1093/nar/gkr213>. Publication: Kapsner et al. (2021) <doi:10.1002/ijc.33681>.

Authors:Lorenz A. Kapsner [cre, aut, cph], Evgeny A. Moskalev [aut]

rBiasCorrection_0.3.4.9001.tar.gz
rBiasCorrection_0.3.4.9001.zip(r-4.5)rBiasCorrection_0.3.4.9001.zip(r-4.4)rBiasCorrection_0.3.4.9001.zip(r-4.3)
rBiasCorrection_0.3.4.9001.tgz(r-4.4-any)rBiasCorrection_0.3.4.9001.tgz(r-4.3-any)
rBiasCorrection_0.3.4.9001.tar.gz(r-4.5-noble)rBiasCorrection_0.3.4.9001.tar.gz(r-4.4-noble)
rBiasCorrection_0.3.4.9001.tgz(r-4.4-emscripten)rBiasCorrection_0.3.4.9001.tgz(r-4.3-emscripten)
rBiasCorrection.pdf |rBiasCorrection.html
rBiasCorrection/json (API)

# Install 'rBiasCorrection' in R:
install.packages('rBiasCorrection', repos = c('https://kapsner.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/kapsner/rbiascorrection/issues

Datasets:

On CRAN:

bias-correctiongene-methylationpcr

17 exports 1 stars 1.11 score 39 dependencies 1 dependents 5 scripts 1.3k downloads

Last updated 2 years agofrom:3873d8f363. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 12 2024
R-4.5-winOKSep 12 2024
R-4.5-linuxOKSep 12 2024
R-4.4-winOKSep 12 2024
R-4.4-macOKSep 12 2024
R-4.3-winOKSep 12 2024
R-4.3-macOKSep 12 2024

Exports:aggregated_inputbetter_modelbiascorrectionclean_dtclean_upcreate_exampleplotcreatebarerrorplotsget_timestamphandle_text_inputon_startplotting_utilityregression_utilitysolving_equationsstatistics_listsubstitutions_createwrite_csvwrite_log

Dependencies:clicodetoolscolorspacedata.tabledigestfansifarverfuturefuture.applyggplot2globalsgluegtableisobandlabelinglatticelifecyclelistenvmagrittrMASSMatrixmgcvmunsellnlmenls2parallellypillarpkgconfigpolynomprotoR6RColorBrewerrlangscalestibbleutf8vctrsviridisLitewithr

rBiasCorrection

Rendered fromrBiasCorrection_howto.Rmdusingknitr::rmarkdownon Sep 12 2024.

Last update: 2022-06-19
Started: 2019-12-17

rBiasCorrection: Benchmarking

Rendered fromrBiasCorrection_benchmarking.Rmdusingknitr::rmarkdownon Sep 12 2024.

Last update: 2020-07-18
Started: 2020-07-16